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Orthohantavirus is a genus of viruses that includes all hantaviruses (family Hantaviridae) that cause disease in humans. Orthohantaviruses, hereafter referred to as hantaviruses, are naturally found primarily in rodents. In general, each hantavirus is carried by one rodent species and each rodent that carries a hantavirus carries one hantavirus species. Hantaviruses in their natural reservoirs usually cause an asymptomatic, persistent infection. In humans, however, hantaviruses cause two diseases: hemorrhagic fever with renal syndrome (HFRS) and hantavirus pulmonary syndrome (HPS). HFRS is mainly caused by hantaviruses in Africa, Asia, and Europe, called Old World hantaviruses, and HPS is usually caused by hantaviruses in the Americas, called New World hantaviruses.

Hantaviruses are transmitted mainly through aerosols and droplets that contain rodent excretions, as well as through contaminated food, bites, and scratches. Environmental factors such as rainfall, temperature, and humidity influence transmission. Human-to-human transmission does not occur. HFRS is marked by kidney disease with kidney swelling, excess protein in urine, and blood in urine. The case fatality rate of HFRS varies from less than 1% to 15% depending on the virus. A mild form of HFRS often called nephropathia epidemica is often caused by Puumala virus and Dobrava-Belgrade virus. For HPS, initial symptoms are flu-like, with fever, headache, and muscle pain, followed by sudden respiratory failure. HPS has a higher case fatality rate than HFRS, at 30–60%. For both HFRS and HPS, illness is the result of increased vascular permeability, decreased platelet count, and overreaction of the immune system.

The hantavirus genome consists of three single-stranded negative-sense RNA segments that encode one protein each: an RNA-dependent RNA polymerase (RdRp), a spike glycoprotein precursor, and the N protein. Segments are encased in N proteins to form ribonucleoprotein (RNP) complexes that each have a copy of RdRp attached. RNP complexes are surrounded by a lipid envelope that has spike proteins emanating from its surface. Replication begins when spikes attach to the surface of cells. After entering the cell, the envelope fuses with endosomes and lysosomes, which empties RNPs into the cytoplasm. RdRp then transcribes the genome to produce messenger RNA (mRNA) for translation by host ribosomes to produce viral proteins and replicates the genome for progeny viruses. Old World hantaviruses assemble in the Golgi apparatus and obtain their envelope from it, before being transported to the cell membrane to leave the cell via exocytosis. New World hantaviruses assemble near the cell membrane and obtain their envelope from it as they leave the cell by budding from its surface.

Hantaviruses were first discovered following the Korean War. During the war, HFRS was a common ailment in soldiers stationed near the Hantan river. In 1978 in South Korea, the first hantavirus was isolated, Hantaan virus, and was shown to be responsible for the outbreak during the war. Within a few years, other hantaviruses that cause HFRS were discovered throughout Eurasia. In 1982, the World Health Organization gave HFRS its name, and in 1987, hantaviruses were classified for the first time. They collectively bear the name of Hantaan virus and the Hantan river. In 1993, an outbreak of HPS occurred in the Four Corners region in the United States, which led to the discovery of pathogenic New World hantaviruses and the second disease caused by hantaviruses. Since then, hantaviruses have been found not just in rodents but also moles, shrews, and bats.

DiseaseEdit

{{#invoke:Labelled list hatnote|labelledList|Main article|Main articles|Main page|Main pages}} Hantaviruses are sorted into Old World hantaviruses (OWHVs), which typically cause hemorrhagic fever with renal syndrome (HFRS) in Africa, Asia, and Europe, and New World hantaviruses (NWHVs) which are associated with hantavirus pulmonary syndrome (HPS) in the Americas. The case fatality rate of HFRS ranges from less than 1% to 15%, while for HPS it is 30–60%.<ref name=chen >Template:Cite journal</ref><ref name=toledo >Template:Cite journal</ref><ref name=kim >Template:Cite journal</ref><ref name=jacob >Template:Cite journal</ref> The severity of symptoms of HFRS varies depending on the virus: Hantaan virus causes severe HFRS, Seoul virus moderate HFRS, Puumala virus mild HFRS,<ref name=tariq >Template:Cite journal</ref> and Dobrava-Belgrade virus infection varies from mild to severe depending on genotype.<ref name=klempa2013 >Template:Cite journal</ref> The mild form of HFRS caused by Puumala virus and Dobrava-Belgrade virus is often called nephropathia epidemica (NE).<ref name=ricco >Template:Cite journal</ref><ref name=afzal >Template:Cite journal</ref> Repeated infections of hantaviruses have not been observed, so recovering from infection likely grants life-long immunity.<ref name=hansen >Template:Cite journal</ref><ref name=kruger2011 >Template:Cite journal</ref>

HFRS is characterized by five phases: febrile, hypotensive, low urine production (oliguria), high urine production (polyuria), and recovery. Symptoms usually occur 12–16 days after exposure to the virus.<ref name=zhang >Template:Cite journal</ref> Acute kidney disease occurs with kidney swelling, excess protein in urine (proteinuria), and blood in urine (hematuria). Other symptoms include headache, lower back pain, nausea, vomiting, diarrhea, bloody stool, the appearance of spots on the skin (petechiae), and hemorrhaging in the respiratory tract.<ref name=chen /><ref name=sehgal >Template:Cite journal</ref> Renal failure leads oliguria, and restoration of kidney health comes with polyuria.<ref name=chen /><ref name=tariq /> Recovery typically takes a few months.<ref name=lupusoru >Template:Cite journal</ref> In more mild cases, the different phases of HFRS may be hard to distinguish,<ref name=avsic >Template:Cite journal</ref> or some phases may be absent, while in more severe cases, the phases may overlap.<ref name=tariq />

HPS is mainly caused by two viruses: Andes virus and Sin Nombre virus. The disease has three phases: prodromal (early), cardiopulmonary, and recovery. Symptoms occur about 1–8 weeks after exposure to the virus. Early symptoms include fever, headache, muscle pain, shortness of breath (dyspnea), and low platelet count (thrombocytopenia). During the cardiopulmonary phase, there is elevated heart rate (tachycardia), irregular heartbeats (arrhythmias), and cardiogenic shock. Pulmonary capillary leakage can lead to acute respiratory distress syndrome, buildup of fluids in the lungs (pulmonary edema), hypotension, and buildup of fluid in the chest cavity (pleural effusion). These symptoms can cause sudden death.<ref name=chen /><ref name=jacob /><ref name=koehler >Template:Cite journal</ref> After the cardiopulmonary phase is resolved, polyuria occurs while recovery takes months.<ref name=koehler /> While HFRS is associated with renal disease and HPS with cardiopulmonary disease, HFRS may sometimes include cardiopulmonary symptoms associated with HPS and HPS may sometimes include renal symptoms associated with HFRS.<ref name=koehler /><ref name=noack >Template:Cite journal</ref>

TransmissionEdit

Template:Multiple image Hantaviruses that cause illness in humans are mainly transmitted by rodents. In rodents, hantaviruses usually cause an asymptomatic, persistent infection. Infected animals can spread the virus to uninfected animals through aerosols or droplets from their feces, urine, saliva,<ref name=tariq /> and blood,<ref name=douglas >Template:Cite journal</ref> through consumption of contaminated food, from virus particles shed from skin or fur,<ref name=dsouza >Template:Cite journal</ref> via grooming,<ref name=jacob /> or through biting and scratching. Hantaviruses can also spread through the fecal-oral route and across the placenta during pregnancy from mother to child. They can survive for 10 days at room temperature,<ref name=chen /> 15 days in a temperate environment,<ref name=ricco /> and more than 18 days at 4 degrees Celsius (39.2 degrees Fahrenheit), which aids in the transmission of the virus.<ref name=chen /> Environmental conditions favorable to the reproduction and spread of rodents are known to increase disease transmission.<ref name=toledo /> Living in a rural environment, in unhygienic settings, and interacting with environments shared with hosts are the biggest risk factors for infection, especially among people who are hikers,<ref name=tariq /> farmers, and forestry workers,<ref name=ricco /> as well as those in mining, the military,<ref name=dsouza /><ref name=mustonen >Template:Cite journal</ref> and zoology.<ref name=koehler />

Rodents can transmit hantaviruses to humans through aerosols or droplets from the excretions and through consumption of contaminated food. Rodent bites and scratches are also an important means of transmission to humans. The prevalence of hantavirus among rodent breeders and rodent pet owners is up to 80%. In one outbreak in North America in 2017, Seoul virus infected 31 people through contact with pet rats. Andes virus has often been claimed by researchers to be the only hantavirus known to be spread from person to person, usually after coming into close contact with an infected person. It can also reportedly spread through human saliva, airborne droplets from coughing and sneezing, and to newborns through breast milk and the placenta.<ref name=chen /> A 2021 systematic review, however, found human-to-human transmission of the Andes virus to not be strongly supported by evidence but nonetheless possible in limited circumstances, especially between close household contacts such as sexual partners.<ref name=toledo /><ref name=tortosa >Template:Cite journal</ref> There is also suspicion that Puumala virus can spread from person to person through blood and platelet transfusions.<ref name=meier1 >Template:Cite journal</ref>

Hantaviruses that cause HFRS can be transmitted through the bites of mites and ticks.<ref name=tkachenko >Template:Cite journal</ref> Research has also shown that pigs can be infected with Hantaan virus without severe symptoms and sows can transmit the virus to offspring through the placenta. Pig-to-human transmission may also be possible, as one swine breeder was infected with hantavirus with no contact with rodents or mites. Hantaan virus and Puumala virus have been detected in cattle, deer, and rabbits, and antibodies to Seoul virus have been detected in cats and dogs, but the role of these hosts for hantaviruses is unknown.<ref name=chen /> Infection in these other animals can potentially facilitate the evolution of hantaviruses by genome reassortment.<ref name=koehler /> In addition to rodents, some hantaviruses are found in small insectivorous mammals, such as moles,<ref name=chen /><ref name=klempa >Template:Cite journal</ref> shrews, and bats.<ref name=afzal /><ref name=koehler /> Hantavirus antigen has also been detected in a variety of bird species, indicative of infection.<ref name=tkachenko />

Human built environments are important in hantavirus transmission. Deforestation and excess agriculture may destroy rodents' natural habitat.<ref name=koehler /> The expansion of agricultural land is associated with a decline in predator populations, which enables hantavirus host species to use farm monocultures as nesting and foraging sites. Agricultural sites built in close proximity to rodents' natural habitats can facilitate the proliferation of rodents as they may be attracted to animal feed.<ref name=douglas /><ref name=moirano >Template:Cite journal</ref> Sewers and stormwater drainage systems may be inhabited by rodents, especially in areas with poor solid waste management. Maritime trade and travel have also been implicated in the spread of hantaviruses.<ref name=douglas /> Research results are inconsistent on whether urban living increases or decreases hantavirus incidence.<ref name=moirano /> Seroprevalence, which shows past infection to hantavirus, is consistently higher in occupations and areas that have greater exposure to rodents.<ref name=tortosa /> Poor living conditions on battlefields, in military camps, and in refugee camps make soldiers and refugees at great risk of exposure as well.<ref name=mustonen />

EnvironmentEdit

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El Niño's effect on local climates.

Rodent species that carry hantaviruses inhabit a diverse range of habitats, including desert-like biomes, equatorial and tropical forests, swamps, savannas, fields, and salt marshes.<ref name=douglas /> The seroprevalence of hantaviruses in their host species has been observed to range from 5.9% to 38% in the Americas, and 3% to about 19% worldwide, depending on testing method and location.<ref name=dsouza /><ref name=orico >Template:Cite journal</ref> In some places, such as South Korea, routine trapping of wild rodents is performed to surveil hantavirus circulation.<ref name=kim /> High humidity can benefit rodent populations in warm climates, where it may positively impact plant growth and thus food availability.<ref name=douglas /> Increased forest coverage is associated with increased hantavirus incidence, particularly in Europe.<ref name=moirano />

Climate change and environmental degradation increase contact areas between rodent hosts and humans, which increases potential exposure to hantaviruses. An example of this was the 1993 Four Corners outbreak in the United States, which was immediately preceded by elevated rainfall from the 1992-1993 El Niño warming period. This caused a substantial growth in the food supply for rodents, which led to rapid growth in their population and facilitated greater spread of the hantavirus that caused that outbreak.<ref name=douglas /><ref name=dsouza /><ref name=tian >Template:Cite journal</ref>

Rainfall is consistently associated with hantavirus incidence in various patterns. Heavy rainfall is a risk factor for outbreaks in the following months,<ref name=hansen /> but may negatively affect incidence by flooding rodent burrows and nests.<ref name=tian /> In places that have wet and dry seasons, infections are more common in the wet season than in the dry season.<ref name=douglas /> Low rainfall and drought are associated with decreased incidence since such conditions result in a smaller rodent population,<ref name=tian /> but displacement of rodent populations via drought or flood can lead to an increase in rodent-human interactions and infections.<ref name=douglas /> In Europe, however, no association between rainfall and disease incidence has been found.<ref name=tian />

Temperature has varying effects on hantavirus transmission. Higher temperatures create unfavorable environments for virus survival and decreases activity levels of Neotropic rodents, but it can cause rodents to seek shelter from heat in human settings and is beneficial for aerosol production.<ref name=koehler /><ref name=douglas /> Lower temperature can prolong virus survival outside a host.<ref name=douglas /> Higher average winter temperature is associated with reduced survival of bank voles, the natural reservoir of Puumala virus, but increased survival of striped field mice in China, the natural reservoirs of Hantaan virus.<ref name=tian /> Extreme temperatures, whether hot or cold, are associated with lower disease incidence.<ref name=hansen />

Genome and structureEdit

The genome of hantaviruses is segmented into three parts: the large (L), medium (M), and small (S) segments. Each part is a single-stranded negative-sense RNA strand and consists of 10,000–15,000 nucleotides in total.<ref name=jacob /> The segments form into circles via non-covalent bonding of the ends of the genome.<ref name=ortho >{{#invoke:citation/CS1|citation |CitationClass=web }}</ref> The L segment is about 6.6 kilobases (kb) in length<ref name=dsouza /> and encodes a viral RNA-dependent RNA polymerase (RdRp), which mediates transcription and replication of viral RNA. The M segment, about 3.7 kb in length,<ref name=dsouza /> encodes a glycoprotein precursor that is co-translated and cleaved into Gn and Gc. Gn and Gc bind to cell receptors, regulate immune responses, and induce protective antibodies. The S segment is around 2.1 kb in length<ref name=dsouza /> and encodes the nucleocapsid protein N, which binds to and protects viral RNA. An open reading frame in the N gene on the S segment<ref name=bae >Template:Cite journal</ref> of some orthohantaviruses also encodes the non-structural protein NS that inhibits interferon production in host cells. The untranslated regions at the ends of the genome are highly conserved and participate in the replication and transcription of the genome.<ref name=chen /><ref name=jacob /><ref name=tariq />

Individual hantavirus particles (virions) are usually spherical, but may be oval, pleomorphic,<ref name=deng >Template:Cite journal</ref> or tubular.<ref name=jacob /> The diameter of the virion is 70–350 nanometers (nm).<ref name=dsouza /> The outer part of the virion is a lipid envelope that is about 5 nm thick. Embedded in the envelope are the surface spike glycoproteins Gn and Gc,<ref name=chen /> which are arranged in a lattice pattern.<ref name=dsouza /> Each surface spike is composed of a tetramer of Gn and Gc (four units each) that has four-fold rotational symmetry, and extends about 10 nm out from the envelope.<ref name=dsouza /> Gn forms the stalk of the spike and Gc the head.<ref name=jacob /> Inside the envelope are helical nucleocapsids made of many copies of the nucleocapsid protein N, which are attached to the virus's genome to form ribonucleoprotein (RNP) complexes. Each RNP complex has a copy of RdRp attached to it.<ref name=chen /> Hantaviruses do not encode matrix proteins to assist with structuring the virion, so how surface proteins organize into a sphere with a symmetrical lattice is not yet known.<ref name=gcalvo >Template:Cite journal</ref>

Life cycleEdit

File:Sin Nombre hanta virus TEM PHIL 1136 lores.jpg
Transmission electron micrograph of Sin Nombre virus.

Vascular endothelial cells and macrophages are the primary cells infected by hantaviruses.<ref name=afzal /> Podocytes, tubular cells, dendritic cells, and lymphocytes can also be infected.<ref name=chen /><ref name=koehler /> Attachment and entry into the host cell is mediated by the binding of the viral glycoprotein spikes to host cell receptors, particularly β3 integrins. Decay acceleration factors, complement receptors, and, for New World hantaviruses, protocadherin-1 have also been proposed to be involved in attachment.<ref name=koehler /><ref name=gcalvo /> After attachment, hantaviruses rely on several ways to enter a cell, including micropinocytosis, clathrin-independent receptor-mediated endocytosis and cholesterol- or caveolae-dependent endocytosis.<ref name=chen /><ref name=jacob /><ref name=koehler /> Old World hantaviruses use clathrin-dependent endocytosis while New World hantaviruses use clathrin-independent endocytosis.<ref name=koehler /><ref name=meier1 /><ref name=lapointe >Template:Cite journal</ref>

After entering a cell, virions form vesicles that are transported to early endosomes, then late endosomes and lysosomal compartments. A decrease in pH then causes the viral envelope to fuse with the endosome or lysosome.<ref name=dsouza /><ref name=meier1 /><ref name=lapointe /> This fusion releases viral ribonucleoprotein complexes into the cell cytoplasm, which initiates transcription and replication by RdRp.<ref name=chen /><ref name=koehler /><ref name=dsouza /> RdRp transcribes viral -ssRNA into complementary positive-sense strands, then snatches 5′ ("five prime") ends of host messenger RNA (mRNA) to prepare mRNA for translation by host ribosomes to produce viral proteins.<ref name=jacob /><ref name=dsouza /> Complementary RNA strands are also used to produce copies of the genome, which are encapsulated by N proteins to form RNPs.<ref name=chen /><ref name=koehler /><ref name=dsouza />

During virion assembly, the glycoprotein precursor is cleaved in the endoplasmic reticulum into the Gn and Gc glycoproteins by host cell signal peptidases.<ref name=chen /><ref name=jacob /> Gn and Gc are modified by N-glycan chains, which stabilize the spike structure and assist in assembly in the Golgi apparatus for Old World hantaviruses<ref name=chen /> or at the cell membrane for New World hantaviruses.<ref name=koehler /> Old World hantaviruses obtain their viral envelope from the Golgi apparatus and are then transported to the cell membrane in vesicles to leave the cell via exocytosis. On the other hand, New World hantavirus RNPs are transported to the cell membrane, where they bud from the surface of the cell to obtain their envelope and leave the cell.<ref name=koehler /><ref name=dsouza /><ref name=meier1 />

EvolutionEdit

The most common form of evolution for hantaviruses is mutations through single nucleotide substitutions, insertions, and deletions.<ref name=chen /> Hantaviruses are usually restricted to individual natural reservoir species and evolve alongside their hosts,<ref name=chen /> but this one-species-one-hantavirus relationship is not true for all hantaviruses. The exact evolutionary history of hantaviruses is likely obscured by many instances of genome reassortment, host spillover, and host-switching.<ref name=kuhn >Template:Cite journal</ref> Within species, geography has affected the evolution of hantaviruses. For example, Hantaan virus and Seoul virus have both formed multiple lineages corresponding to their geographic distribution.<ref name=chen />

Because hantaviruses have segmented genomes, they are capable of genetic recombination and reassortment in which segments from different viruses can combine to form new viruses. This occurs often in nature and facilitates the adaptation of hantaviruses to multiple hosts and ecosystems. Recombination in OWHVs of the S and M segments is usually observed amongst viruses within species, but can occur between species. Reassortment in NWHVs of the S and M segments has been observed in rodents. Among Puumala viruses isolated from rodents in 2005-2009, 19.1% of them were identified as reassortments.<ref name=chen /><ref name=kabwe >Template:Cite journal</ref> Diploid progeny are also possible, in which virions may possess two of the same segment from two parent viruses.<ref name=klempa />

ClassificationEdit

Orthohantavirus belongs to the family Hantaviridae, which contains all hantaviruses. The genus has 37 species, listed hereafter with the exemplar virus of the species. In general, species bear the name of the exemplar virus with the suffix -ense.<ref name=ortho /><ref name=ictv >{{#invoke:citation/CS1|citation |CitationClass=web }}</ref> Template:Div col

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Many other hantaviruses are unclassified, though some may be isolates of other viruses:<ref name=ortho /><ref>{{#invoke:citation/CS1|citation |CitationClass=web }}</ref> Template:Div col

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HistoryEdit

Hantavirus hemorrhagic disease was likely first described in the Huangdi Neijing, an ancient Chinese medical text, in Imperial China during the Warring States Period of 475–221 BCE.<ref name=kuhn /> Hantaviruses have been suggested as a cause of "trench nephritis" in soldiers during the US Civil War and in British soldiers in Flanders, Belgium<ref name=kuhn /> during the First World War. The disease was also mentioned in East Asia, where it was probably endemic, and was first described scientifically in Vladivostok in 1913–1914. During the Second World War in 1942, an outbreak of disease with symptoms characteristic of hantavirus infection occurred in Salla, Eastern Lapland, Finland among German and Finnish soldiers. This outbreak was later reported in 1980 to be caused by a virus transmitted by bank voles and was named Puumala virus.<ref name=mustonen /> Also during the war, around 10,000 Japanese soldiers stationed in Manchuria developed HFRS.<ref name=tariq />

Around 3,200<ref name=mustonen /> cases of HFRS occurred among United Nations soldiers stationed near the Hantan river<ref name=gcalvo /> during the Korean War, where it was first identified in 1951<ref name=chen /> and named "Korean hemorrhagic fever" and "epidemic hemorrhagic fever".<ref name=kuhn /> After the war, in 1976 in South Korea, Ho Wang Lee (Korean: 이호황)<ref name=lupusoru /> tested striped field mice and showed that antigens from their lungs were reactive to antibodies in sera from war survivors.<ref name=kuhn /> In 1978, the virus was isolated for the first time and named Hantaan virus after the river.<ref name=sehgal /> Retrospective analysis showed that Hantaan virus was responsible for the war outbreak.<ref name=mustonen /> Other hantaviruses that caused by HFRS were then discovered throughout Eurasia. The disease had a variety of names, so in 1982, the World Health Organization officially named it "hemorrhagic fever with renal syndrome".<ref name=tariq /><ref name=kuhn /> In 1985, this group of viruses were named "hantaviruses" after Hantaan virus,<ref name=deng /> and in 1987, the genus Hantavirus was established to accommodate them in the then-family Bunyaviridae.<ref name=orthohistory />

In 1993, an outbreak of highly lethal acute respiratory distress syndrome occurred in the Four Corners region of the United States. This outbreak was determined to be caused by a hantavirus, now named Sin Nombre virus, and represented the first confirmed instance of pathogenic hantaviruses in the Americas as well as the discovery of a new type of disease caused by hantaviruses. The new disease was named "hantavirus pulmonary syndrome". During subsequent years, numerous other hantaviruses were discovered in the Americas,<ref name=jacob /><ref name=kuhn /> including Andes virus, which has been claimed to be transmissible from person to person.<ref name=toledo /> HFRS, however, remains much more common than HPS—more than 100,000 cases of HFRS occur each year,<ref name=moirano /> compared to only a few hundred cases of HPS annually.<ref name=engdahl >Template:Cite journal</ref>

Over time, hundreds of bunyaviruses were discovered but could not be accommodated within the genera of the Bunyaviridae family. To address this, in 2017 bunyaviruses were elevated to the rank of order, Bunyavirales, and hantaviruses, along with the other bunyavirus genera, were elevated to the rank of family. Hantaviruses, also called hantavirids, now also refer to members of the family Hantaviridae. The prior genus of Hantavirus was renamed Orthohantavirus to distinguish them from members of the family, and the genus's members are often called orthohantaviruses. In 2019, additional genera, subfamilies, and families were created to classify non-rodent hantaviruses,<ref name=kuhn /> and in 2023 binomial nomenclature was adopted for hantaviruses.<ref name=chen />

NotesEdit

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ReferencesEdit

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External linksEdit

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