Editing ReBoot (section)

==== Synopsis ====
The first ''Paradigms Lost'' issue opens with the aftermath of the Hunt: Mainframe is devastated and overrun with Zombinomes, the User is missing, and the entire population is being evacuated to the Super Computer. Worse still, the weakened Guardian Collective is facing viral attacks and uprisings across the entire Net. Turbo blames Bob for this, saying that his views on viruses became widespread and left them weakened. Enzo Matrix, meanwhile, is a star pupil in the Guardian Academy. The viral threat is ended when the Codemasters pledge their help, offering a firmware named Gnosis. Gnosis is uploaded to every System on the Net, erasing all viruses and ending the crisis. The first issue ends with the Codemasters' Guildmaster activating a "Phase Two" for the implemented Gnosis.

The second and third issues had the heroes, now joined by Lens, try to stop the Codemasters from using Gnosis to access the Code itself, allowing the Guildmaster total control. However, Gnosis swiftly decides that it can complete its task better with the Guildmaster deleted, and following that it eliminates the Guardians. Mainframe and 36 other systems are enslaved as power sources for its mission. Dot tries to carry out rebel action in Mainframe, Bob and Lens retreat to the bowels of the Super-Computer to hide, and Enzo is captured and discovers Megabyte (his code retained by Gnosis) is a key Gnosis advisor.

Bob is recruited by Exidy, an entity that is the source of the Code and trapped by Gnosis in the Net; intent on restoring balance and stability, she gives Bob the ability to wield the Code. While the main heroes link up and Bob is sent to take on Gnosis directly, Enzo verbally battles with Megabyte for influence over Gnosis, pointing out that it could accomplish its task quicker if it was cooperative and asked for assistance. When Gnosis comes around to this, Bob decides to allow the weapon to live and reprograms it, and has it restore the Net to the way it was. That done, he frees Exidy and returns home.