Editing Modelling biological systems (section)

==Further reading==
{{Refbegin}}
<!--are these meant to be gen refs or further notes? there is absolutely NO indication anywhere.-->
* {{Cite journal| first1 = A. -L. | first2 = Z.
| title = Network biology* understanding the cell's functional organization
| last1 = Barab
| journal = Nature Reviews Genetics
| volume = 5
| issue = 2
| pages = 101–113
| year = 2004
| pmid = 14735121
| doi = 10.1038/nrg1272
| last2 = Oltvai
| s2cid = 10950726
}}
* {{Cite journal
| author1 = Covert| first2 = C.| first3 = B.
| title = Regulation of gene expression in flux balance models of metabolism
| journal = Journal of Theoretical Biology
| volume = 213
| issue = 1
| pages = 73–88
| year = 2001
| pmid = 11708855
| doi = 10.1006/jtbi.2001.2405
| last2 = Schilling
| last3 = Palsson
| bibcode = 2001JThBi.213...73C| citeseerx = 10.1.1.110.1647}}
* {{Cite journal| first1 = M. W.| first2 = B. .
| title = Transcriptional regulation in constraints-based metabolic models of Escherichia coli
| journal = The Journal of Biological Chemistry
| volume = 277
| pages = 28058–28064
| last2 = Palsson
| last1 = Covert
| issue = 31
| year = 2002
| pmid = 12006566
| doi = 10.1074/jbc.M201691200
| doi-access = free
}}
* {{Cite journal
| pmid = 10805808
| year = 2000
| author1 = Edwards | first2 = B.
| title = The Escherichia coli MG1655 in silico metabolic genotype* its definition, characteristics, and capabilities
| volume = 97
| issue = 10
| pages = 5528–5533
| pmc = 25862
| journal = Proceedings of the National Academy of Sciences of the United States of America
| doi = 10.1073/pnas.97.10.5528
| last2 = Palsson
|bibcode = 2000PNAS...97.5528E | doi-access = free
}}
* <!--[[Richard Bonneau]]--> {{Cite journal| first1 = R.| title = Learning biological networks* from modules to dynamics| journal = Nature Chemical Biology| volume = 4| issue = 11| pages = 658–664| last1 = Bonneau| year = 2008| pmid = 18936750| doi = 10.1038/nchembio.122     }}
* {{Cite journal| first1 = J. S.
| first2 = R. U.
| last2 = Ibarra
| first3 = B. O.
| title = In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
| journal = Nature Biotechnology
| issue = 2
| last1 = Edwards
| volume = 19
| pages = 125–130
| last3 = Palsson
| year = 2001
| pmid = 11175725
| doi = 10.1038/84379
| s2cid = 1619105
}}
* {{Cite journal| issue = 2–3| pages = 121–124| doi = 10.1002/(SICI)1097-0290(19980420)58:2/3<121::AID-BIT2>3.0.CO;2-N| volume = 58| pmid = 10191380| journal = Biotechnology and Bioengineering| year = 1998| title = Increasing the flux in metabolic pathways* A metabolic control analysis perspective| last1 = Fell | first1 = D. A.}}
* {{Cite journal| first1 = L. H.
| first2 = J. J.
| first3 = S.
| first4 = A. W.
| title = From molecular to modular cell biology
| journal = Nature
| last1 = Hartwell
| volume = 402
| last3 = Leibler
| last2 = Hopfield
| issue = 6761 Suppl
| last4 = Murray
| pages = C47–C52
| year = 1999
| pmid = 10591225
| doi = 10.1038/35011540
| s2cid = 34290973
| doi-access = free
}}
* {{Cite journal
| author1 = Ideker| first2 = T.| first3 = L.
| title = A new approach to decoding life* systems biology
| journal = Annual Review of Genomics and Human Genetics
| volume = 2
| issue = 1
| pages = 343–372
| year = 2001
| pmid = 11701654
| doi = 10.1146/annurev.genom.2.1.343
| last2 = Galitski
| last3 = Hood
| s2cid = 922378}}
* {{Cite journal| first1 = H.
| title = Computational systems biology
| journal = Nature
| volume = 420
| issue = 6912
| pages = 206–210
| last1 = Kitano
| year = 2002
| pmid = 12432404
| doi = 10.1038/nature01254       
|bibcode = 2002Natur.420..206K | s2cid = 4401115
}}
* {{Cite journal| first1 = H.
| title = Systems biology* a brief overview
| journal = Science
| volume = 295
| issue = 5560
| pages = 1662–1664
| last1 = Kitano
| year = 2002
| pmid = 11872829
| doi = 10.1126/science.1069492      
|bibcode = 2002Sci...295.1662K | citeseerx = 10.1.1.473.8389
| s2cid = 2703843
}}
* {{Cite journal
| author1 = Kitano
| title = Looking beyond the details* a rise in system-oriented approaches in genetics and molecular biology
| journal = Current Genetics
| volume = 41
| issue = 1
| pages = 1–10
| year = 2002
| pmid = 12073094
| doi = 10.1007/s00294-002-0285-z
| s2cid = 18976498
}}
* {{Cite journal| first1 = A. G. | first2 = M. I. | first3 = H. R. | first4 = B. A. | first5 = R. | first6 = E. M. | first7 = J. T. | first8 = R. | last1 = Gilman | first9 = H. R.| last10 = Arkin| last6 = Ross | first10 = A. P.| last11 = Cobb | first11 = M. H.| last12 = Cyster | first12 = J. G.| last13 = Devreotes | first13 = P. N.| last14 = Ferrell | first14 = J. E.| last15 = Fruman | first15 = D.| last16 = Gold | first16 = M.| last17 = Weiss | first17 = A.| last18 = Stull | first18 = J. T.| last19 = Berridge | first19 = M. J.| last20 = Cantley | first20 = L. C.| last21 = Catterall | first21 = W. A.| last22 = Coughlin | first22 = S. R.| last23 = Olson | first23 = E. N.| last24 = Smith | first24 = T. F.| last25 = Brugge | first25 = J. S.| last26 = Botstein | first26 = D.| last27 = Dixon | first27 = J. E.| last28 = Hunter | first28 = T.| last29 = Lefkowitz | first29 = R. J.| last30 = Pawson | first30 = A. J. | title = Overview of the Alliance for Cellular Signaling | volume = 420 | pages = 703–706 | pmid = 12478301 | last4 = Harris | journal = Nature | last7 = Stull | issue = 6916 | last5 = Long | last3 = Bourne | last9 = Bourne | year = 2002 | last2 = Simon
| doi = 10.1038/nature01304 | last8 = Taussig  
| bibcode = 2002Natur.420..703G| s2cid = 4367083 | url = https://deepblue.lib.umich.edu/bitstream/2027.42/62977/1/nature01304.pdf | doi-access = free }}
* {{Cite book  | last1 = Palsson | first1 = Bernhard | title = Systems biology* properties of reconstructed networks | year = 2006 | publisher = Cambridge University Press | location = Cambridge  | isbn = 978-0-521-85903-5 }}
* {{Cite journal
| pmid = 14580578
| year = 2003
| author1 = Kauffman | first2 = P. | first3 = J. S.
| title = Advances in flux balance analysis
| volume = 14
| issue = 5
| pages = 491–496
| journal = Current Opinion in Biotechnology
| doi = 10.1016/j.copbio.2003.08.001
| last2 = Prakash
| last3 = Edwards
}}
* {{Cite journal| first1 = D.| first2 = D.| first3 = G. M.| title = Analysis of optimality in natural and perturbed metabolic networks| journal = Proceedings of the National Academy of Sciences of the United States of America| volume = 99| last2 = Vitkup| issue = 23| pages = 15112–15117| last1 = Segrè| year = 2002| pmid = 12415116| pmc = 137552| last3 = Church| doi = 10.1073/pnas.232349399|bibcode = 2002PNAS...9915112S | doi-access = free}}
* {{Cite journal
| pmid = 11178271
| year = 2000
| last1 = Wildermuth
| first1 = MC
| title = Metabolic control analysis* biological applications and insights.
| volume = 1
| issue = 6
| pages = REVIEWS1031
| pmc = 138895
| journal = Genome Biology
| doi = 10.1186/gb-2000-1-6-reviews1031
| doi-access = free
}}
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