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CHARMM
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== Software history == Around 1969, there was considerable interest in developing potential energy functions for small molecules. CHARMM originated at [[Martin Karplus]]'s group at Harvard. Karplus and his then graduate student Bruce Gelin decided the time was ripe to develop a program that would make it possible to take a given amino acid sequence and a set of coordinates (e.g., from the X-ray structure) and to use this information to calculate the energy of the system as a function of the atomic positions. Karplus has acknowledged the importance of major inputs in the development of the (at the time nameless) program, including: * Schneior Lifson's group at the Weizmann Institute, especially from [[Arieh Warshel]] who went to Harvard and brought his consistent force field ('''CFF''') program with him * [[Harold Scheraga]]'s group at Cornell University * Awareness of [[Michael Levitt (biophysicist)|Michael Levitt]]'s pioneering energy calculations for proteins In the 1980s, finally a paper appeared and CHARMM made its public dΓ©but. Gelin's program had by then been considerably restructured. For the publication, Bob Bruccoleri came up with the name HARMM (HARvard Macromolecular Mechanics), but it seemed inappropriate. So they added a C for Chemistry. Karplus said: "''I sometimes wonder if Bruccoleri's original suggestion would have served as a useful warning to inexperienced scientists working with the program.''"<ref name=Karplus2006>{{cite journal |author=Karplus M |year=2006 |title=Spinach on the ceiling: a theoretical chemist's return to biology |journal=Annu Rev Biophys Biomol Struct |volume=35 |issue=1 |pages=1β47 |doi=10.1146/annurev.biophys.33.110502.133350 |pmid=16689626|doi-access= }}</ref> CHARMM has continued to grow and the latest release of the executable program was made in 2015 as CHARMM40b2.
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