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Comparative genomic hybridization
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===Metaphase slide preparation=== The DNA on the slide is a reference sample, and is thus obtained from a karyotypically normal man or woman, though it is preferential to use female DNA as they possess two X chromosomes which contain far more genetic information than the male Y chromosome. Phytohaemagglutinin stimulated peripheral blood lymphocytes are used. 1mL of heparinised blood is added to 10ml of culture medium and incubated for 72 hours at 37 Β°C in an atmosphere of 5% CO<sub>2</sub>. Colchicine is added to arrest the cells in mitosis, the cells are then harvested and treated with hypotonic [[potassium chloride]] and fixed in 3:1 [[methanol]]/[[acetic acid]].<ref name="Weiss,Hermsen,Meijer,VanGrieken,Baak,Kuipers,VanDiest" /> One drop of the cell suspension should then be dropped onto an ethanol cleaned slide from a distance of about 30 cm, optimally this should be carried out at room temperature at humidity levels of 60β70%. Slides should be evaluated by visualisation using a phase contrast microscope, minimal cytoplasm should be observed and chromosomes should not be overlapping and be 400β550 bands long with no separated [[chromatids]] and finally should appear dark rather than shiny. Slides then need to be air dried overnight at room temperature, and any further storage should be in groups of four at β20 Β°C with either [[Silicon dioxide|silica]] beads or [[nitrogen]] present to maintain dryness. Different donors should be tested as hybridization may be variable. Commercially available slides may be used, but should always be tested first.<ref name="Weiss,Hermsen,Meijer,VanGrieken,Baak,Kuipers,VanDiest" />
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