Open main menu
Home
Random
Recent changes
Special pages
Community portal
Preferences
About Wikipedia
Disclaimers
Incubator escapee wiki
Search
User menu
Talk
Dark mode
Contributions
Create account
Log in
Editing
Distance matrix
(section)
Warning:
You are not logged in. Your IP address will be publicly visible if you make any edits. If you
log in
or
create an account
, your edits will be attributed to your username, along with other benefits.
Anti-spam check. Do
not
fill this in!
== Additive distance matrix == An additive distance matrix is a special type of matrix used in [[bioinformatics]] to build a [[phylogenetic tree]]. Let {{mvar|x}} be the lowest common ancestor between two species {{mvar|i}} and {{mvar|j}}, we expect {{mvar|1=''M{{sub|ij}}'' = ''M{{sub|ix}}'' + ''M{{sub|xj}}''}}. This is where the additive metric comes from. A distance matrix {{mvar|M}} for a set of species {{mvar|S}} is said to be additive if and only if there exists a phylogeny {{mvar|T}} for {{mvar|S}} such that: * Every edge {{math|(''u'',''v'')}} in {{mvar|T}} is associated with a positive weight {{mvar|d{{sub|uv}}}} * For every {{math|''i'',''j'' β ''S''}}, {{mvar|M{{sub|ij}}}} equals the sum of the weights along the path from {{mvar|i}} to {{mvar|j}} in {{mvar|T}} For this case, {{mvar|M}} is called an additive matrix and {{mvar|T}} is called an additive tree. Below we can see an example of an additive distance matrix and its corresponding tree: [[File:Additive_distance_matrix.png|444x444px|Additive distance matrix (left) and its phylogeny tree (right)|center|frameless]]
Edit summary
(Briefly describe your changes)
By publishing changes, you agree to the
Terms of Use
, and you irrevocably agree to release your contribution under the
CC BY-SA 4.0 License
and the
GFDL
. You agree that a hyperlink or URL is sufficient attribution under the Creative Commons license.
Cancel
Editing help
(opens in new window)