Editing Ontogeny (section)

== Developmental stages ==
Development of an organism happens through fertilization, cleavage, blastulation, gastrulation, organogenesis, and metamorphosis into an adult.  Each species of [[animal]] has a slightly different journey through these stages, since some stages might be shorter or longer when compared to other species, and where the offspring develops is different for each animal type (e.g., in a hard egg shell, uterus, soft egg shell, on a plant leaf, etc.).<ref>{{Cite web |title=Animal Life Cycles - Growth and Development of Organisms - Diagram (K-2) |url=https://www.exploringnature.org/db/view/Animal-Life-Cycles-Growth-and-Development-of-Organisms-Diagram-K-2 |access-date=2022-04-09 |website=www.exploringnature.org}}</ref>

=== Fertilization ===
In humans, the process of [[Prenatal development|fetal development]] starts after [[sperm]] fertilizes an [[Egg cell|egg]] and they fuse together, kickstarting [[Embryo|embryonic development]]. The fusion of egg and sperm into a [[zygote]] changes the surrounding membrane to not allow any more sperm to penetrate the egg, so multiple fertilizations can be prevented. Fusion of a zygote also activates the egg so it can begin undergoing cell division.  Each animal [[species]] might not have specifically a sperm and an egg, but two gametes that contain half of the species' typical genetic material and the membranes of these gametes fuse to start creating an offspring.<ref>{{Cite web |title=fertilization {{!}} Steps, Process, & Facts {{!}} Britannica |url=https://www.britannica.com/science/fertilization-reproduction |access-date=2022-04-08 |website=www.britannica.com |language=en}}</ref>

=== Cleavage ===
Not long after successful fertilization by sperm, the zygote undergoes many [[Mitosis|mitotic divisions]], which are also non-sexual cell divisions. [[Cleavage (embryo)|Cleavage]] is the process of cell division, so the starting zygote becomes a collection of identical cells which is a morula and contains cells called blastomeres.<ref name="Muhr-2022">{{cite book |last1=Muhr |first1=Jeremy |last2=Arbor |first2=Tafline C. |last3=Ackerman |first3=Kristin M. |title=StatPearls |date=2024 |publisher=StatPearls Publishing |chapter-url=http://www.ncbi.nlm.nih.gov/books/NBK554394/ |chapter=Embryology, Gastrulation |pmid=32119281 }}</ref> Cleavage prepares the zygote to become an embryo, which is from 2 weeks to 8 weeks after conception (fertilization) in humans.<ref>{{cite book |last1=Gilbert |first1=Scott F. |title=Developmental Biology |edition=6th |date=2000 |publisher=Sinauer Associates |chapter-url=https://www.ncbi.nlm.nih.gov/books/NBK9992/ |chapter=An Introduction to Early Developmental Processes }}</ref>
[[File:Figure_27_01_03.jpg|thumb|590x590px|Process of zygote to gastrula in development]]

=== Blastulation ===
After the zygote has become an embryo, it continues dividing into a hollow sphere of cells, which is a [[Blastulation|blastula]]. These outer cells form a single epithelial layer, the blastoderm, that essentially encases the fluid-filled inside that is the blastocoel. The figure to the right shows the basic process that is modified in different species. Blastulation differs slightly in different species, but in mammals, the eight-cell stage embryo forms into a slightly different type of blastula, called a blastocyst.<ref>{{Cite web |title=blastula {{!}} biology {{!}} Britannica |url=https://www.britannica.com/science/blastula |access-date=2022-04-08 |website=www.britannica.com |language=en}}</ref> Other species such as [[Starfish|sea stars]], [[frog]]s, [[Chicken|chicks]], and [[Mouse|mice]] have all the same structures in this stage, yet the orientation of these features differs, plus these species have additional types of cells in this stage.<ref>{{Cite web |title=Blastulation {{!}} Cleavage and Early Development {{!}} Principles of Development {{!}} Continuity and Evolution of Animal Life |url=https://biocyclopedia.com/index/general_zoology/blastulation.php |access-date=2022-04-08 |website=biocyclopedia.com}}</ref>
[[File:Blastula.png|thumb|457x457px|Blastula to gastrula more detailed]]

=== Gastrulation ===
After blastulation, the single-layered blastula expands and reorganizes into multiple layers, a gastrula (seen in the figure to the right). [[Reptile]]s, [[bird]]s and [[mammal]]s are triploblastic organisms, meaning the gastrula comprises three [[germ layer]]s; the endoderm (inner layer), mesoderm (middle layer), and ectoderm (outer layer).<ref name="Muhr-2022" /> As seen in the figure below, each germ layer will become [[Cell potency|multi-potent stem cells]] that can become a specific tissue depending on the germ layer and is what happens in humans. This [[Cellular differentiation|differentiation]] of germ layers differs slightly, because not all of the organs and tissues below are in all organisms, but corresponding body systems can be substituted in place of these.<ref>{{Cite journal |last=Leptin |first=Maria |date=2005-03-01 |title=Gastrulation Movements: the Logic and the Nuts and Bolts |journal=Developmental Cell |language=English |volume=8 |issue=3 |pages=305–320 |doi=10.1016/j.devcel.2005.02.007 |issn=1534-5807 |pmid=15737927|doi-access=free }}</ref>

=== Organogenesis ===
In the figure below, human germ cells are able to differentiate into the specific organs and tissues they become later on in life.  Germ cells are able to migrate to their final locations to rearrange themselves and some organs are made of two germ layers; one for the outside, the other for the inside.<ref name="Gilbert-2000-2"/>  The [[endoderm]] cells become the internal linings of organisms, such as the stomach, colon, small intestine, liver, and pancreas of the digestive system and the lungs.  The [[mesoderm]] gives rise to other tissues not formed by the ectoderm, such as the heart, muscles, bones, blood, dermis of the skin, bone marrow, and the urogenital system. This germ layer is more specific for species, as it is the distinguishing layer of the three that can identify evolutionarily higher life-forms (e.g., bilateral organisms like humans) from lower-life forms (with radial symmetry). Lastly, the [[ectoderm]] is the outer layer of cells that become the [[epidermis]] and hair while being the precursor to the mammary glands, [[central nervous system]], and the [[peripheral nervous system]]s.<ref>{{Cite web |title=germ layer {{!}} Definition, Primary Layers, & Embryonic Development {{!}} Britannica |url=https://www.britannica.com/science/germ-layer |access-date=2022-04-08 |website=www.britannica.com |language=en}}</ref>

[[File:Germ_layers.jpg|thumb|900x900px|Germ layers and what tissues they become in humans|center]]
[[File:Ernst_Haeckel,_Anthropogenie._Wellcome_L0027291.jpg|thumb|529x529px|Ernst Haeckel, Anthropogenie. |center]]
The figure above shows how the development of a [[pig]], [[Cattle|cow]], [[rabbit]], and [[human]] offspring are similar when compared to one another. This figure shows how the germ layers can become different organs and tissues in evolutionarily higher life-forms and how these species essentially develop very similarly.  Additionally, it shows how multiple species develop in a parallel manner but branch off to develop more specific features for the organism such as hooves, a tail, or ears. [[File:2912_Neurulation-02.jpg|thumb|583x583px|Primary neurulation detailed]]

==== Neurulation ====
In developing [[vertebrate]] offspring, a [[neural tube]] is formed through either [[Neurulation|primary or secondary neurulation]].  Some species develop their spine and nervous system using both primary and secondary neurulation, while others use only primary or secondary neurulation.<ref name="Gilbert-2000">{{cite book |last1=Gilbert |first1=Scott F. |title=Developmental Biology |edition=6th |date=2000 |publisher=Sinauer Associates |chapter-url=https://www.ncbi.nlm.nih.gov/books/NBK10080/ |chapter=Formation of the Neural Tube }}</ref>  In human fetal development, primary neurulation occurs during weeks 3 and 4 of gestation to develop the brain and spinal cord.  Then during weeks 5 and 6 of gestation, secondary neurulation forms the lower sacral and coccygeal cord.<ref name="Müller O'Rahilly Embryonic Development of the Central Nervous System">{{cite book |doi=10.1016/B978-012547626-3/50003-X |chapter=Embryonic Development of the Central Nervous System |title=The Human Nervous System |date=2004 |last1=Müller |first1=Fabiola |last2=O'Rahilly |first2=Ronan |pages=22–48 |isbn=978-0-12-547626-3 }}</ref>

===== Primary Neurulation =====
The diagram to the right illustrates primary neurulation, which is the process of cells surrounding the neural plate interacting with neural plate cells to proliferate, converge, and pinch off to form a hollow tube above the [[notochord]] and mesoderm.  This process is discontinuous and can start at different points along the cranial-caudal axis necessary for it to close.<ref name="Müller O'Rahilly Embryonic Development of the Central Nervous System"/>  After the neural crest closes, the neural crest cells and ectoderm cells separate and the ectoderm becomes the epidermis surrounding this complex.  The neural crest cells differentiate to become components of most of the peripheral nervous system in animals.  Next, the notochord degenerates to become only the [[Intervertebral disc|nucleus pulposus]] of the [[intervertebral disc]]s and the mesoderm cells differentiate to become the [[somite]]s and skeletal muscle later on.  Also during this stage, the neural crest cells become the spinal ganglions, which function as the brain in organisms like [[earthworm]]s and [[arthropod]]s.<ref>{{Cite web |title=ganglion {{!}} physiology {{!}} Britannica |url=https://www.britannica.com/science/ganglion |access-date=2022-04-09 |website=www.britannica.com |language=en}}</ref>  In more advanced organisms like [[amphibian]]s, [[bird]]s and [[mammal]]s;<ref name="Gilbert-2000" /> the spinal ganglions consists of a cluster of nerve bodies positioned along the spinal cord at the dorsal and ventral roots of a spinal nerve, which is a pair of nerves that correspond to a vertebra of the spine.<ref>{{Cite web |title=spinal nerve {{!}} Definition, Function, Diagram, Number, & Facts {{!}} Britannica |url=https://www.britannica.com/science/spinal-nerve |access-date=2022-04-09 |website=www.britannica.com |language=en}}</ref>

===== Secondary Neurulation =====
In secondary neurulation, caudal and sacral regions of the spine are formed after primary neurulation is finished.  This process initiates once primary neurulation is finished and the posterior neuropore closes, so the tail bud can proliferate and condense, then create a cavity and fuse with the central canal of the neural tube.  Secondary neurulation occurs in the small region starting at the [[Tail bud|spinal tail bud]] up to the posterior neuropore, which is the open neural folds near the tail region that don't close through primary neurulation.  As canalization progresses over the next few weeks, neurons and ependymal cells (cells that create cerebral spinal fluid<ref>{{Cite web |title=Ependymal Cells |url=http://medcell.med.yale.edu/histology/nervous_system_lab/ependymal_cells.php |access-date=2022-04-10 |website=medcell.med.yale.edu}}</ref>) differentiate to become the tail end of the spinal cord.  Next, the closed neural tube contains neuroepithelial cells that immediately divide after closure and a second type of cell forms; the neuroblast.  [[Neuroblast]] cells form the mantle layer, which later becomes the [[Grey matter|gray matter]], which then gives rise to a marginal layer that becomes the [[white matter]] of the spinal cord.<ref name="Müller O'Rahilly Embryonic Development of the Central Nervous System"/>  Secondary neurulation is seen in the neural tube of the lumbar and tail vertebrae of [[frog]]s and [[Chicken|chicks]] and in both instances, this process is like a continuation of gastrulation.<ref name="Gilbert-2000" />
[[File:Acraea_zetes_caterpillar_to_pupae_to_butterfly_metamorphosis_by_Nick_Hobgood.jpg|thumb|Acraea zetes caterpillar to pupae to butterfly metamorphosis by Nick Hobgood]]

=== Larval and juvenile phases ===
In most species, the young organism that is just born or hatched is not sexually mature yet and in most animals, this young organism looks quite different than the adult form.<ref name="Gilbert-2000-2">{{cite book |last1=Gilbert |first1=Scott F. |title=Developmental Biology |edition=6th |date=2000 |publisher=Sinauer Associates |chapter-url=https://www.ncbi.nlm.nih.gov/books/NBK9981/ |chapter=The Circle of Life: The Stages of Animal Development }}</ref> This young organism is the larva and is the intermediate form before [[Metamorphosis|metamorphosing]] into an adult.<ref>{{Cite web |title=larva {{!}} Definition, Forms, & Facts {{!}} Britannica |url=https://www.britannica.com/science/larva |access-date=2022-04-25 |website=www.britannica.com |language=en}}</ref><ref name="Gilbert-2015" />  A well known example of a larval form of an animal is the [[caterpillar]] of [[Butterfly|butterflies]] and [[moth]]s.  Caterpillars keep growing and feeding in order for enough energy during the pupal stage, when necessary body parts for [[metamorphosis]] are grown.<ref>{{Cite web |title=Butterfly Life Cycle |url=https://ansp.org/exhibits/online-exhibits/butterflies/lifecycle/ |access-date=2022-04-26 |website=ansp.org |date=14 September 2020 |language=en}}</ref>  The juvenile phase is different in plants and animals, but in plants juvenility is an early phase of plant growth in which plants can't flower.<ref>{{cite book |doi=10.1016/B978-0-12-394807-6.00105-2 |chapter=Juvenility |title=Encyclopedia of Applied Plant Sciences |date=2017 |last1=Sgamma |first1=T. |pages=437–441 |isbn=978-0-12-394808-3 }}</ref>  In animals, the juvenile stage is most commonly found in social mammals, such as [[Dingo|wild dogs]], [[monkey]]s, [[ape]]s, [[lion]]s, [[Wolf|wolves]], and more.  In humans, [[puberty]] marks the end of this stage and [[adolescence]] follows.  Some species begin puberty and reproduction before the juvenile stage is over, such as in female non-human primates.<ref>{{Cite web |title=Juvenile Stage {{!}} Center for Academic Research and Training in Anthropogeny (CARTA) |url=https://carta.anthropogeny.org/moca/topics/juvenile-stage |access-date=2022-04-25 |website=carta.anthropogeny.org}}</ref>  The larval and pupal stages can be seen in the figure to the right.

=== Metamorphosis ===
The process of an organism's body undergoing structural and physical changes after birth or hatching to become suitable for its adult environment is [[metamorphosis]].<ref name="Britannica">{{Cite web |title=metamorphosis {{!}} biology {{!}} Britannica |url=https://www.britannica.com/science/metamorphosis |access-date=2022-04-26 |website=www.britannica.com |language=en}}</ref>  For example, [[amphibian]] tadpoles have a maturation of liver enzymes, [[hemoglobin]], and eye pigments, in addition to their nervous, digestive, and reproductive systems being remodeled.<ref>{{cite book |last1=Gilbert |first1=Scott F. |title=Developmental Biology |edition=6th |date=2000 |publisher=Sinauer Associates |chapter-url=https://www.ncbi.nlm.nih.gov/books/NBK9986/ |chapter=Metamorphosis: The Hormonal Reactivation of Development }}</ref>  In all species, [[Moulting|molting]] and [[juvenile hormone]]s appear to regulate these changes.<ref name="Britannica" />  The figure to the right shows the stages of life in butterflies and their metamorphosis transforms the caterpillar into a butterfly.

=== Adulthood ===
[[Adult]]hood is the stage of when physical and intellectual maturity have been achieved and this differs between species.  In [[Human development (biology)|humans]], adulthood is thought to be around 20 or 21 years old and is the longest stage of life, but in all species it ends with death.<ref>{{Cite web |title=adulthood {{!}} Britannica |url=https://www.britannica.com/science/adulthood |access-date=2022-04-28 |website=www.britannica.com |language=en}}</ref>  In [[dog]]s, small breeds (e.g., [[Yorkshire Terrier]], [[Chihuahua (dog)|Chihuahua]], [[Cocker Spaniel]], etc.) physically mature faster than large breeds (e.g., [[St. Bernard (dog)|Saint Bernard]], [[Great Dane]], [[Golden Retriever]], etc.), so adulthood is reached anywhere from 12 to 24 months or 1 to 2 years.<ref>{{Cite web |date=October 22, 2021 |first=Jan |last=Reisen |title=How Long Does Puppyhood Last? |url=https://www.akc.org/expert-advice/puppy-information/how-long-does-puppyhood-last/ |access-date=2022-04-28 |website=American Kennel Club |language=en}}</ref>  In contrast, many insect species have long larval stages and the adult stage is only for reproduction.  The silkworm [[moth]]s don't have mouthparts and don't feed, so they have to consume enough food during the larval stage for energy to survive and mate.<ref name="Gilbert-2000-2" />

==== Senescence ====
[[Senescence]] is when cells stop dividing but don't die, but these cells can build up and cause problems in the body.  These cells can release substances that cause inflammation and can damage healthy nearby cells.<ref>{{Cite web |date=2011-02-02 |title=senescence |url=https://www.cancer.gov/publications/dictionaries/cancer-terms/def/senescence |access-date=2022-04-28 |work=NCI's Dictionary of Cancer Terms |publisher=National Cancer Institute |language=en}}</ref> Senescence can be induced by un-repaired DNA damage (e.g., from radiation,<ref>{{Cite journal |last1=Borrego-Soto |first1=Gissela |last2=Ortiz-López |first2=Rocío |last3=Rojas-Martínez |first3=Augusto |date=2015 |title=Ionizing radiation-induced DNA injury and damage detection in patients with breast cancer |journal=Genetics and Molecular Biology |volume=38 |issue=4 |pages=420–432 |doi=10.1590/S1415-475738420150019 |pmc=4763322 |pmid=26692152 }}</ref> old age, etc.) or other cellular stress<ref>{{cite journal |last1=Narita |first1=M |title=Cellular senescence and chromatin organisation |journal=British Journal of Cancer |date=March 2007 |volume=96 |issue=5 |pages=686–691 |doi=10.1038/sj.bjc.6603636 |pmid=17311013 |pmc=2360064 }}</ref> and also is the state of being old.<ref>{{Cite web |title=Definition of SENESCENCE |url=https://www.merriam-webster.com/dictionary/senescence |access-date=2022-04-28 |website=www.merriam-webster.com |language=en}}</ref>

=== Ontogenetic allometry ===
Most organisms undergo [[allometry|allometric]] changes in [[shape]] as they grow and [[Developmental biology|mature]], while others engage in [[metamorphosis]].  Even reptiles (non-avian sauropsids, e.g., [[crocodilians]], [[turtles]], [[snakes]],<ref>{{cite journal | last1 = Pough | first1 = F. H. | year = 1978 | title = Ontogenetic changes in endurance in water snakes (''Natrix sipedon''): Physiological correlates and ecological consequences | journal = Copeia | volume = 1978 | issue = 1| pages = 69–75 | doi=10.2307/1443823| jstor = 1443823 }}</ref> and [[lizards]]<ref>{{cite journal |last1=Garland |first1=Theodore |title=Ontogenetic and individual variation in size, shape and speed in the Australian agamid lizard Amphibolurus nuchalis |journal=Journal of Zoology |date=November 1985 |volume=207 |issue=3 |pages=425–439 |doi=10.1111/j.1469-7998.1985.tb04941.x }}</ref>), in which the offspring are often viewed as miniature adults, show a variety of ontogenetic changes in [[Morphology (biology)|morphology]] and [[physiology]].<ref>{{cite journal |last1=Garland |first1=T. Jr. |author-link=Theodore Garland Jr. |last2=Else |first2=P. L. |year=1987 |title=Seasonal, sexual, and individual variation in endurance and activity metabolism in lizards |journal=American Journal of Physiology. Regulatory, Integrative and Comparative Physiology |volume=252 |issue=3 |pages=R439–R449 |doi=10.1152/ajpregu.1987.252.3.r439 |pmid=3826408 }}</ref>