Editing Ramachandran plot (section)

==Software==
*[http://tomcat.cs.rhul.ac.uk/home/mxba001/ Web-based Structural Analysis tool for any uploaded PDB file, producing Ramachandran plots, computing dihedral angles and extracting sequence from PDB] {{Webarchive|url=https://web.archive.org/web/20160305042525/http://tomcat.cs.rhul.ac.uk/home/mxba001/ |date=2016-03-05 }}
*[https://web.archive.org/web/20090726062008/http://www.fos.su.se/~pdbdna/input_Raman.html Web-based tool showing Ramachandran plot of any PDB entry]
*[http://molprobity.biochem.duke.edu MolProbity web service that produces Ramachandran plots and other validation of any PDB-format file]
*[http://services.mbi.ucla.edu/SAVES SAVES] (Structure Analysis and Verification) &mdash; uses WHATCHECK, PROCHECK, and does its own internal Ramachandran Plot 
*[[STING]]
*[[Pymol]] with the DynoPlot extension
*[[Visual Molecular Dynamics|VMD]], distributed with dynamic Ramachandran plot plugin
*[[WHAT CHECK]], the stand-alone validation routines from the [[WHAT IF software]]
*[[UCSF Chimera]], found under the Model Panel.
*[[Sirius visualization software|Sirius]]
*[https://spdbv.vital-it.ch/ Swiss PDB Viewer]
*[http://spin.niddk.nih.gov/NMRPipe/talos/ TALOS]
*[http://www.al-nasir.com/www/Jamie/Zeus/ Zeus molecular viewer] &mdash; found under "Tools" menu, high quality plots with regional contours
*[http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/ Procheck]
*[http://dunbrack.fccc.edu/ndrd Neighbor-Dependent and Neighbor-Independent Ramachandran Probability Distributions]<ref name="ndrd"/>
*See also [[Protein Data Bank#Molecular graphic visualisation tools|PDB]] for a list of similar software.