Editing Avida (software) (section)

===Scientific publications featuring Avida===
* C. Adami and C.T. Brown (1994), Evolutionary Learning in the 2D Artificial Life Systems  Avida, in: R. Brooks, P. Maes (Eds.), Proc. Artificial Life IV, MIT Press, Cambridge, MA, p.&nbsp;377-381. {{arXiv|adap-org/9405003}}
* [[R. E. Lenski]], C. Ofria, T. C. Collier, C. Adami (1999). Genome Complexity, Robustness, and Genetic Interactions in Digital Organisms.  ''Nature'' '''400:'''661-664.
* C.O. Wilke, J.L. Wang, C. Ofria, R.E. Lenski, and C. Adami (2001). Evolution of Digital Organisms at High Mutation Rate Leads To Survival of the Flattest. ''Nature'' '''412:'''331-333.
* R.E. Lenski, C. Ofria, R.T. Pennock, and C. Adami (2003). The Evolutionary Origin of Complex Features. ''Nature'' '''423:'''139-145.
* S.S. Chow, C.O. Wilke, C. Ofria, R.E. Lenski, and C. Adami (2004). Adaptive Radiation from Resource Competition in Digital Organisms. ''Science'' '''305:'''84-86.
* J. Clune, D. Misevic, C. Ofria, R.E. Lenski, S.F. Elena, and R. Sanjuán. Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes. PLoS Computational Biology 4(9): 2008. {{doi|10.1371/journal.pcbi.1000187|doi-access=free}}
* Clune J, Goldsby HJ, Ofria C, and Pennock RT (2011) Selective pressures for accurate altruism targeting: Evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory. Proceedings of the Royal Society. [https://www.msu.edu/~jclune/webfiles/publications/Clune-2011-InclusiveFitness-Proc.Royal.Society.pdf pdf] ([https://web.archive.org/web/20111207001544/https://www.msu.edu/~jclune/webfiles/publications/Clune-2011-InclusiveFitness-Proc.Royal.Society.pdf archive])
* Benjamin E. Beckmann, Philip K. McKinley, Charles Ofria (2007). Evolution of an adaptive sleep response in digital organisms. ''ECAL 2007'' [https://web.archive.org/web/20100213012528/http://www.cse.msu.edu/notables/images/ecal-2007-sleep.pdf pdf]

[[Category:Artificial life]]
[[Category:Artificial life models]]
[[Category:Digital organisms]]