Editing Structural bioinformatics (section)

=== Other structural databases ===
In addition to the [[Protein Data Bank|Protein Data Bank (PDB)]], there are several databases of protein structures and other macromolecules. Examples include:

* '''[[MMDB]]''': Experimentally determined three-dimensional structures of biomolecules derived from Protein Data Bank (PDB).<ref>{{Cite web|url=https://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml|title=Macromolecular Structures Resource Group|website=www.ncbi.nlm.nih.gov|access-date=2020-04-13}}</ref>
* '''Nucleic acid Data Base (NDB):''' Experimentally determined information about nucleic acids (DNA, RNA).<ref>{{Cite web|url=http://ndbserver.rutgers.edu/|title=Nucleic Acid Database (NDB)|website=ndbserver.rutgers.edu|access-date=2020-04-13}}</ref>
* '''[[Structural Classification of Proteins database|Structural Classification of Proteins (SCOP)]]:''' Comprehensive description of the structural and evolutionary relationships between structurally known proteins.<ref>{{Cite web|url=http://scop.mrc-lmb.cam.ac.uk/scop/|title=SCOP: Structural Classification of Proteins|date=2007-09-11|archive-url=https://web.archive.org/web/20070911012207/http://scop.mrc-lmb.cam.ac.uk/scop/|access-date=2020-04-13|archive-date=2007-09-11}}</ref>
* '''TOPOFIT-DB:''' Protein structural alignments based on the TOPOFIT method.<ref>{{cite journal | vauthors = Ilyin VA, Abyzov A, Leslin CM | title = Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point | journal = Protein Science | volume = 13 | issue = 7 | pages = 1865–74 | date = July 2004 | pmid = 15215530 | pmc = 2279929 | doi = 10.1110/ps.04672604 }}</ref>
* '''Electron Density Server (EDS):''' Electron-density maps and statistics about the fit of crystal structures and their maps.<ref>{{Cite web|url=http://eds.bmc.uu.se/eds/|title=EDS - Uppsala Electron Density Server|website=eds.bmc.uu.se|access-date=2020-04-13}}</ref>
* '''[[CASP]]:''' Prediction Center Community-wide, worldwide experiment for protein structure prediction [[CASP]].<ref>{{Cite web|url=http://www.predictioncenter.org/|title=Home - Prediction Center|website=www.predictioncenter.org|access-date=2020-04-13}}</ref>
* '''PISCES server for creating non-redundant lists of proteins:''' Generates PDB list by sequence identity and structural quality criteria.<ref>{{Cite web|url=http://dunbrack.fccc.edu/PISCES.php|title=:: Dunbrack Lab|website=dunbrack.fccc.edu|access-date=2020-04-13}}</ref>
* '''The Structural Biology Knowledgebase:''' Tools to aid in protein research design.<ref>{{Cite web|url=http://sbkb.org/|title=Structural Biology KnowlegebaseSBKB - SBKB|website=sbkb.org|access-date=2020-04-13}}</ref>
* '''[[ProtCID]]:''' The Protein Common Interface Database Database of similar protein-protein interfaces in crystal structures of homologous proteins.<ref>{{Cite web|url=http://dunbrack2.fccc.edu/protcid|title=Protein Common Interface Database|website=dunbrack2.fccc.edu|access-date=2020-04-13}}</ref>
* '''[[AlphaFold]]:'''AlphaFold - Protein Structure Database.<ref>{{Cite web|url=https://alphafold.ebi.ac.uk|title=AlphaFold}}</ref>